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1

Clifford Algebra and the Discretizable Molecular Distance Geometry Problem

Lavor, Carlile, Alves, Rafael, Figueiredo, Weber, Petraglia, Antonio, Maculan, Nelson

Journal:

Advances in Applied Clifford Algebras

Year:

2015

Language:

english

File:

PDF, 558 KB

english, 2015

2

A NEW QUANTUM ALGORITHM FOR SOLVING THE MINIMUM SEARCHING PROBLEM

KOWADA, LUIS ANTONIO BRASIL, LAVOR, CARLILE, PORTUGAL, RENATO, DE FIGUEIREDO, CELINA M. H.

Journal:

International Journal of Quantum Information

Year:

2008

Language:

english

File:

PDF, 192 KB

english, 2008

3

Using an interval branch-and-bound algorithm in the Hartree–Fock method

Carlile C. Lavor, Thiago Messias Cardozo, Marco Antonio Chaer Nascimento

Journal:

International Journal of Quantum Chemistry

Year:

2005

Language:

english

File:

PDF, 91 KB

english, 2005

4

Euclidean Distance Geometry and Applications

Liberti, Leo, Lavor, Carlile, Maculan, Nelson, Mucherino, Antonio

Journal:

Year:

2014

Language:

english

File:

PDF, 2.99 MB

english, 2014

5

Distance Geometry || Is the Distance Geometry Problem in NP?

Mucherino, Antonio, Lavor, Carlile, Liberti, Leo, Maculan, Nelson

Year:

2013

Language:

english

File:

PDF, 239 KB

english, 2013

6

Preface

Mucherino, Antonio, de Freitas, Rosiane, Lavor, Carlile

Journal:

Discrete Applied Mathematics

Year:

2015

Language:

english

File:

PDF, 308 KB

english, 2015

7

The K-discretization and K-incident graphs for discretizable Distance Geometry

Abud, Germano, Alencar, Jorge, Lavor, Carlile, Liberti, Leo, Mucherino, Antonio

Journal:

Optimization Letters

Year:

2018

Language:

english

File:

PDF, 639 KB

english, 2018

8

The discretizable molecular distance geometry problem

Carlile Lavor, Leo Liberti, Nelson Maculan, Antonio Mucherino

Journal:

Computational Optimization and Applications

Year:

2012

Language:

english

File:

PDF, 1.12 MB

english, 2012

9

Distance Geometry || Universal Rigidity of Bar Frameworks in General Position: A Euclidean Distance Matrix Approach

Mucherino, Antonio, Lavor, Carlile, Liberti, Leo, Maculan, Nelson

Year:

2013

Language:

english

File:

PDF, 305 KB

english, 2013

10

Health and Health Care of Mothers and Children in a Suburban Area of Luanda, Angola

Humbwavali, João Baptista, Giugliani, Camila, Duncan, Bruce Bartholow, Harzheim, Erno, Lavor, Antônio Carlile Holanda, Lavor, Míria Campos, Barbosa, Maria Idalice, Thomas, Patrícia Barros, Hauser, Lis

Journal:

Journal of Community Health

Year:

2014

Language:

english

File:

PDF, 211 KB

english, 2014

11

Recent advances on the Discretizable Molecular Distance Geometry Problem

Carlile Lavor, Leo Liberti, Nelson Maculan, Antonio Mucherino

Journal:

European Journal of Operational Research

Year:

2012

Language:

english

File:

PDF, 611 KB

english, 2012

12

Molecular distance geometry methods: from continuous to discrete

Leo Liberti, Carlile Lavor, Antonio Mucherino, Nelson Maculan

Journal:

International Transactions in Operational Research

Year:

2011

Language:

english

File:

PDF, 295 KB

english, 2011

13

Discretization orders for distance geometry problems

Carlile Lavor, Jon Lee, Audrey Lee-St. John, Leo Liberti, Antonio Mucherino, Maxim Sviridenko

Journal:

Optimization Letters

Year:

2012

Language:

english

File:

PDF, 237 KB

english, 2012

14

Distance Geometry || Mixed Volume and Distance Geometry Techniques for Counting Euclidean Embeddings of Rigid Graphs

Mucherino, Antonio, Lavor, Carlile, Liberti, Leo, Maculan, Nelson

Year:

2013

Language:

english

File:

PDF, 436 KB

english, 2013

15

Systematic exploration of protein conformational space using a Distance Geometry approach

Malliavin, Therese E, Mucherino, Antonio, Lavor, Carlile, Liberti, Leo

Journal:

Journal of Chemical Information and Modeling

Year:

2019

Language:

english

File:

PDF, 5.17 MB

english, 2019

16

Distance Geometry ||

Mucherino, Antonio, Lavor, Carlile, Liberti, Leo, Maculan, Nelson

Year:

2013

Language:

english

File:

PDF, 238 KB

english, 2013

17

An algorithm to enumerate all possible protein conformations verifying a set of distance constraints

Cassioli, Andrea, Bardiaux, Benjamin, Bouvier, Guillaume, Mucherino, Antonio, Alves, Rafael, Liberti, Leo, Nilges, Michael, Lavor, Carlile, Malliavin, Thérèse E

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 2.85 MB

english, 2015

18

Distance Geometry || Stochastic Proximity Embedding: A Simple, Fast and Scalable Algorithm for Solving the Distance Geometry Problem

Mucherino, Antonio, Lavor, Carlile, Liberti, Leo, Maculan, Nelson

Year:

2013

Language:

english

File:

PDF, 720 KB

english, 2013

19

Recent advances on the interval distance geometry problem

Gonçalves, Douglas S., Mucherino, Antonio, Lavor, Carlile, Liberti, Leo

Journal:

Journal of Global Optimization

Year:

2017

Language:

english

File:

PDF, 1.32 MB

english, 2017

20

Preface: Special issue on distances in optimization and graphs dedicated to the memory of Michel Deza

Mucherino, Antonio, Lavor, Carlile

Journal:

Optimization Letters

Year:

2019

Language:

english

File:

PDF, 164 KB

english, 2019

21

Distance Geometry || The Discretizable Molecular Distance Geometry Problem seems Easier on Proteins

Mucherino, Antonio, Lavor, Carlile, Liberti, Leo, Maculan, Nelson

Year:

2013

Language:

english

File:

PDF, 389 KB

english, 2013

22

Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures

Billinge, Simon J. L., Duxbury, Phillip M., Gonçalves, Douglas S., Lavor, Carlile, Mucherino, Antonio

Journal:

Annals of Operations Research

Year:

2018

Language:

english

File:

PDF, 1.97 MB

english, 2018

23

TheintervalBranch-and-Prune algorithm for the discretizable molecular distance geometry problem with inexact distances

Carlile Lavor, Leo Liberti, Antonio Mucherino

Journal:

Journal of Global Optimization

Year:

2013

Language:

english

File:

PDF, 655 KB

english, 2013

24

Community health workers programme in Luanda, Angola: an evaluation of the implementation process

Giugliani, Camila, Duncan, Bruce, Harzheim, Erno, Lavor, Antônio Carlile, Lavor, Míria, Machado, Márcia Maria, Barbosa, Maria, Bornstein, Vera, Pontes, Ana, Knauth, Daniela

Journal:

Human Resources for Health

Year:

2014

File:

PDF, 433 KB

2014

25

Annals of Computer Science and Information Systems [IEEE 2014 Federated Conference on Computer Science and Information Systems - (2014.09.7-2014.09.10)] Proceedings of the 2014 Federated Conference on Computer Science and Information Systems - An adaptive branching scheme for the Branch & Prune algorithm applied to Distance Geometry

Gonçalves, Douglas, Mucherino, Antonio, Lavor, Carlile

Year:

2014

Language:

english

File:

PDF, 137 KB

english, 2014

26

EXPLOITING SYMMETRY PROPERTIES OF THE DISCRETIZABLE MOLECULAR DISTANCE GEOMETRY PROBLEM

MUCHERINO, ANTONIO, LAVOR, CARLILE, LIBERTI, LEO

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2012

Language:

english

File:

PDF, 978 KB

english, 2012

27

Distance Geometry || Spheres Unions and Intersections and Some of their Applications in Molecular Modeling

Mucherino, Antonio, Lavor, Carlile, Liberti, Leo, Maculan, Nelson

Year:

2013

Language:

english

File:

PDF, 389 KB

english, 2013

28

On the number of realizations of certain Henneberg graphs arising in protein conformation

Liberti, Leo, Masson, Benoît, Lee, Jon, Lavor, Carlile, Mucherino, Antonio

Journal:

Discrete Applied Mathematics

Year:

2014

Language:

english

File:

PDF, 859 KB

english, 2014

29

[ACM Press the 11th Annual conference - Montreal, Québec, Canada (2009.07.08-2009.07.12)] Proceedings of the 11th Annual conference on Genetic and evolutionary computation - GECCO '09 - Comparisons between an exact and a metaheuristic algorithm for the molecular distance geometry problem

Mucherino, Antonio, Liberti, Leo, Lavor, Carlile, Maculan, Nelson

Year:

2009

Language:

english

File:

PDF, 474 KB

english, 2009

30

Assigned and unassigned distance geometry: applications to biological molecules and nanostructures

Billinge, Simon J. L., Duxbury, Phillip M., Gonçalves, Douglas S., Lavor, Carlile, Mucherino, Antonio

Journal:

4OR: A Quarterly Journal of Operations Research

Year:

2016

Language:

english

File:

PDF, 4.14 MB

english, 2016

31

Distance Geometry || Solving Spatial Constraints with Generalized Distance Geometry

Mucherino, Antonio, Lavor, Carlile, Liberti, Leo, Maculan, Nelson

Year:

2013

Language:

english

File:

PDF, 388 KB

english, 2013

32

A symmetry-based splitting strategy for discretizable distance geometry problems

Fidalgo, Felipe, Gonçalves, Douglas S., Lavor, Carlile, Liberti, Leo, Mucherino, Antonio

Journal:

Journal of Global Optimization

Year:

2018

Language:

english

File:

PDF, 951 KB

english, 2018

33

Reformulation in mathematical programming: An application to quantum chemistry

Leo Liberti, Carlile Lavor, Nelson Maculan, Marco Antonio Chaer Nascimento

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 518 KB

english, 2009

34

[ACM Press the 2009 ACM symposium - Honolulu, Hawaii (2009.03.08-2008.03.12)] Proceedings of the 2009 ACM symposium on Applied Computing - SAC '09 - On a discretizable subclass of instances of the molecular distance geometry problem

Lavor, Carlile, Liberti, Leo, Mucherino, Antonio, Maculan, Nelson

Year:

2009

Language:

english

File:

PDF, 251 KB

english, 2009

35

Feasibility check for the distance geometry problem: an application to molecular conformations

Agra, Agostinho, Figueiredo, Rosa, Lavor, Carlile, Maculan, Nelson, Pereira, António, Requejo, Cristina

Journal:

International Transactions in Operational Research

Year:

2016

Language:

english

File:

PDF, 347 KB

english, 2016

36

Discretization orders for protein side chains

Costa, Virginia, Mucherino, Antonio, Lavor, Carlile, Cassioli, Andrea, Carvalho, Luiz M., Maculan, Nelson

Journal:

Journal of Global Optimization

Year:

2014

Language:

english

File:

PDF, 925 KB

english, 2014

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